Check out our new AI Product: MARA  - Molecular Analysis and Reasoning Assistant Discover

Nanome Stacks

Nanome's plugin infrastructure that enables communication between scientific tools and our collaborative ideation environment.

Harness the power of plugins

Accelerate your R&D with cloud computing, computational power, and expert tools. The extended functionality includes the ability to create new windows inside of the virtual environment and is easily customizable through a Python API and a drag and drop user interface (StacksStudio).

Link to external computational packages such as:
  • Molecular simulations
  • Docking algorithms
  • Real-time atom scoring
  • Custom databases

Our Plugins

A list of our main plugins used by our customers

2D Chemical Preview

Generate 2D images of molecules using RDKit.

Chemical Interactions

Explore intermolecular interfaces through their chemical interactions predicted by atom type, partial charge, and distance.

Chemical Properties

Evaluate Lipinski's "Rule of 5" and solubility predictors of molecules determined by intramolecular features.

Conformer Generator

Generate conformers for a selected molecule

Data Table

View metadata on multiple structures in a table and graph


Leverage Autodock Smina in Nanome to dock your compounds

Electrostatic Potential

Calculate and display an electrostatic potential map on a structure

High Quality Surfaces

Generate stunning publication-ready surface representations and coloring


Hydrogenate your molecule with correct protonation states at a selected pH, powered by RDKit.

Merge as Frames

Create multi-model SDFs by merging entries into a single entry with multiple frames


Perform energy minimization to adjust the 3D geometry of your selection reducing adverse inter- and intramolecular forces to reach the nearest, lowest energy state.

Real-Time Atom Scoring

Examine each atom's contribution to a molecule's docking score in real-time as you make adjustments or add new moieties.


Load 3D structures from a SMILES strings

Structure Prep

Structure Prep adds bonds and secondary structure information to your molecules.

Superimpose Proteins

Overlay multiple proteins in 3D space and calculate RMSD


Vault allows for the distribution of files (PDB, SDF, PDF, etc.) into a web interface to be made available inside of Nanome.

Why Stacks?

Cloud Computing

Off-board heavy calculations and tools integrations into scalable cloud computing.

Computational Power

Unlock computational power for the current XR standalone headsets.

Expert Tools

Extends your scientific capabilities by leveraging existing expert tools and advanced computational techniques.