Nanome's plugin infrastructure that enables communication between scientific tools and our collaborative ideation environment.
Accelerate your R&D with cloud computing, computational power, and expert tools. The extended functionality includes the ability to create new windows inside of the virtual environment and is easily customizable through a Python API and a drag and drop user interface (StacksStudio).
Generate 2D images of molecules using RDKit.
Explore intermolecular interfaces through their chemical interactions predicted by atom type, partial charge, and distance.
Evaluate Lipinski's "Rule of 5" and solubility predictors of molecules determined by intramolecular features.
Generate conformers for a selected molecule
View metadata on multiple structures in a table and graph
Leverage Autodock Smina in Nanome to dock your compounds
Calculate and display an electrostatic potential map on a structure
Generate stunning publication-ready surface representations and coloring
Hydrogenate your molecule with correct protonation states at a selected pH, powered by RDKit.
Create multi-model SDFs by merging entries into a single entry with multiple frames
Perform energy minimization to adjust the 3D geometry of your selection reducing adverse inter- and intramolecular forces to reach the nearest, lowest energy state.
Examine each atom's contribution to a molecule's docking score in real-time as you make adjustments or add new moieties.
Load 3D structures from a SMILES strings
Structure Prep adds bonds and secondary structure information to your molecules.
Overlay multiple proteins in 3D space and calculate RMSD
Vault allows for the distribution of files (PDB, SDF, PDF, etc.) into a web interface to be made available inside of Nanome.
Off-board heavy calculations and tools integrations into scalable cloud computing.
Unlock computational power for the current XR standalone headsets.
Extends your scientific capabilities by leveraging existing expert tools and advanced computational techniques.